Introduction | Using inferred daily incidence to compute $\mathcal{R}_t$ | Using the input data to infer daily incidence | Wastewater input data | Clinical input data | Estimating $\mathcal | Specifying inputs | Specifying parameters | Estimating $\mathcal{R}_t$ | Visualizing $\mathcal{R}_t$ estimates | Estimating $\mathcal | Specifying inputs | Specifying parameters